Run the R code review protocol on R scripts. Checks code quality, reproducibility, domain correctness, and professional standards. Produces a report without editing files.
SKILL.md
Review R Scripts
Run the comprehensive R code review protocol.
Steps
Identify scripts to review:
If $ARGUMENTS is a specific .R filename: review that file only
If $ARGUMENTS is LectureN: review all R scripts matching that lecture
If $ARGUMENTS is all: review all R scripts in scripts/R/ and Figures/*/
For each script, launch the r-reviewer agent with instructions to:
Follow the full protocol in the agent instructions
Read .claude/rules/r-code-conventions.md for current standards
Save report to quality_reports/[script_name]_r_review.md
After all reviews complete, present a summary:
Total issues found per script
Breakdown by severity (Critical / High / Medium / Low)
Top 3 most critical issues
IMPORTANT: Do NOT edit any R source files.
Only produce reports. Fixes are applied after user review.
