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    K-Dense-AI

    venue-templates

    K-Dense-AI/venue-templates
    Writing
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    About

    Access comprehensive LaTeX templates, formatting requirements, and submission guidelines for major scientific publication venues (Nature, Science, PLOS, IEEE, ACM), academic conferences (NeurIPS,...

    SKILL.md

    Venue Templates

    Overview

    Access comprehensive LaTeX templates, formatting requirements, and submission guidelines for major scientific publication venues, academic conferences, research posters, and grant proposals. This skill provides ready-to-use templates and detailed specifications for successful academic submissions across disciplines.

    Use this skill when preparing manuscripts for journal submission, conference papers, research posters, or grant proposals and need venue-specific formatting requirements and templates.

    When to Use This Skill

    This skill should be used when:

    • Preparing a manuscript for submission to a specific journal (Nature, Science, PLOS, IEEE, etc.)
    • Writing a conference paper with specific formatting requirements (NeurIPS, ICML, CHI, etc.)
    • Creating an academic research poster for conferences
    • Drafting grant proposals for federal agencies (NSF, NIH, DOE, DARPA) or private foundations
    • Checking formatting requirements and page limits for target venues
    • Customizing templates with author information and project details
    • Verifying document compliance with venue specifications

    Visual Enhancement with Scientific Schematics

    When creating documents with this skill, always consider adding scientific diagrams and schematics to enhance visual communication.

    If your document does not already contain schematics or diagrams:

    • Use the scientific-schematics skill to generate AI-powered publication-quality diagrams
    • Simply describe your desired diagram in natural language
    • Nano Banana Pro will automatically generate, review, and refine the schematic

    For new documents: Scientific schematics should be generated by default to visually represent key concepts, workflows, architectures, or relationships described in the text.

    How to generate schematics:

    python scripts/generate_schematic.py "your diagram description" -o figures/output.png
    

    The AI will automatically:

    • Create publication-quality images with proper formatting
    • Review and refine through multiple iterations
    • Ensure accessibility (colorblind-friendly, high contrast)
    • Save outputs in the figures/ directory

    When to add schematics:

    • Methodology flowcharts for papers
    • Conceptual framework diagrams
    • System architecture illustrations
    • Data flow diagrams
    • Experimental design visualizations
    • Research workflow diagrams
    • Any complex concept that benefits from visualization

    For detailed guidance on creating schematics, refer to the scientific-schematics skill documentation.


    Core Capabilities

    1. Journal Article Templates

    Access LaTeX templates and formatting guidelines for 50+ major scientific journals across disciplines:

    Nature Portfolio:

    • Nature, Nature Methods, Nature Biotechnology, Nature Machine Intelligence
    • Nature Communications, Nature Protocols
    • Scientific Reports

    Science Family:

    • Science, Science Advances, Science Translational Medicine
    • Science Immunology, Science Robotics

    PLOS (Public Library of Science):

    • PLOS ONE, PLOS Biology, PLOS Computational Biology
    • PLOS Medicine, PLOS Genetics

    Cell Press:

    • Cell, Neuron, Immunity, Cell Reports
    • Molecular Cell, Developmental Cell

    IEEE Publications:

    • IEEE Transactions (various disciplines)
    • IEEE Access, IEEE Journal templates

    ACM Publications:

    • ACM Transactions, Communications of the ACM
    • ACM conference proceedings

    Other Major Publishers:

    • Springer journals (various disciplines)
    • Elsevier journals (custom templates)
    • Wiley journals
    • BMC journals
    • Frontiers journals

    2. Conference Paper Templates

    Conference-specific templates with proper formatting for major academic conferences:

    Machine Learning & AI:

    • NeurIPS (Neural Information Processing Systems)
    • ICML (International Conference on Machine Learning)
    • ICLR (International Conference on Learning Representations)
    • CVPR (Computer Vision and Pattern Recognition)
    • AAAI (Association for the Advancement of Artificial Intelligence)

    Computer Science:

    • ACM CHI (Human-Computer Interaction)
    • SIGKDD (Knowledge Discovery and Data Mining)
    • EMNLP (Empirical Methods in Natural Language Processing)
    • SIGIR (Information Retrieval)
    • USENIX conferences

    Biology & Bioinformatics:

    • ISMB (Intelligent Systems for Molecular Biology)
    • RECOMB (Research in Computational Molecular Biology)
    • PSB (Pacific Symposium on Biocomputing)

    Engineering:

    • IEEE conference templates (various disciplines)
    • ASME, AIAA conferences

    3. Research Poster Templates

    Academic poster templates for conference presentations:

    Standard Formats:

    • A0 (841 × 1189 mm / 33.1 × 46.8 in)
    • A1 (594 × 841 mm / 23.4 × 33.1 in)
    • 36" × 48" (914 × 1219 mm) - Common US size
    • 42" × 56" (1067 × 1422 mm)
    • 48" × 36" (landscape orientation)

    Template Packages:

    • beamerposter: Classic academic poster template
    • tikzposter: Modern, colorful poster design
    • baposter: Structured multi-column layout

    Design Features:

    • Optimal font sizes for readability at distance
    • Color schemes (colorblind-safe palettes)
    • Grid layouts and column structures
    • QR code integration for supplementary materials

    4. Grant Proposal Templates

    Templates and formatting requirements for major funding agencies:

    NSF (National Science Foundation):

    • Full proposal template (15-page project description)
    • Project Summary (1 page: Overview, Intellectual Merit, Broader Impacts)
    • Budget and budget justification
    • Biographical sketch (3-page limit)
    • Facilities, Equipment, and Other Resources
    • Data Management Plan

    NIH (National Institutes of Health):

    • R01 Research Grant (multi-year)
    • R21 Exploratory/Developmental Grant
    • K Awards (Career Development)
    • Specific Aims Page (1 page, most critical component)
    • Research Strategy (Significance, Innovation, Approach)
    • Biographical sketches (5-page limit)

    DOE (Department of Energy):

    • Office of Science proposals
    • ARPA-E templates
    • Technology Readiness Level (TRL) descriptions
    • Commercialization and impact sections

    DARPA (Defense Advanced Research Projects Agency):

    • BAA (Broad Agency Announcement) responses
    • Heilmeier Catechism framework
    • Technical approach and milestones
    • Transition planning

    Private Foundations:

    • Gates Foundation
    • Wellcome Trust
    • Howard Hughes Medical Institute (HHMI)
    • Chan Zuckerberg Initiative (CZI)

    Workflow: Finding and Using Templates

    Step 1: Identify Target Venue

    Determine the specific publication venue, conference, or funding agency:

    Example queries:
    - "I need to submit to Nature"
    - "What are the requirements for NeurIPS 2025?"
    - "Show me NSF proposal formatting"
    - "I'm creating a poster for ISMB"
    

    Step 2: Query Template and Requirements

    Access venue-specific templates and formatting guidelines:

    For Journals:

    # Load journal formatting requirements
    Reference: references/journals_formatting.md
    Search for: "Nature" or specific journal name
    
    # Retrieve template
    Template: assets/journals/nature_article.tex
    

    For Conferences:

    # Load conference formatting
    Reference: references/conferences_formatting.md
    Search for: "NeurIPS" or specific conference
    
    # Retrieve template
    Template: assets/journals/neurips_article.tex
    

    For Posters:

    # Load poster guidelines
    Reference: references/posters_guidelines.md
    
    # Retrieve template
    Template: assets/posters/beamerposter_academic.tex
    

    For Grants:

    # Load grant requirements
    Reference: references/grants_requirements.md
    Search for: "NSF" or specific agency
    
    # Retrieve template
    Template: assets/grants/nsf_proposal_template.tex
    

    Step 3: Review Formatting Requirements

    Check critical specifications before customizing:

    Key Requirements to Verify:

    • Page limits (varies by venue)
    • Font size and family
    • Margin specifications
    • Line spacing
    • Citation style (APA, Vancouver, Nature, etc.)
    • Figure/table requirements
    • File format (PDF, Word, LaTeX source)
    • Anonymization (for double-blind review)
    • Supplementary material limits

    Step 4: Customize Template

    Use helper scripts or manual customization:

    Option 1: Helper Script (Recommended):

    python scripts/customize_template.py \
      --template assets/journals/nature_article.tex \
      --title "Your Paper Title" \
      --authors "First Author, Second Author" \
      --affiliations "University Name" \
      --output my_nature_paper.tex
    

    Option 2: Manual Editing:

    • Open template file
    • Replace placeholder text (marked with comments)
    • Fill in title, authors, affiliations, abstract
    • Add your content to each section

    Step 5: Validate Format

    Check compliance with venue requirements:

    python scripts/validate_format.py \
      --file my_paper.pdf \
      --venue "Nature" \
      --check-all
    

    Validation Checks:

    • Page count within limits
    • Font sizes correct
    • Margins meet specifications
    • References formatted correctly
    • Figures meet resolution requirements

    Step 6: Compile and Review

    Compile LaTeX and review output:

    # Compile LaTeX
    pdflatex my_paper.tex
    bibtex my_paper
    pdflatex my_paper.tex
    pdflatex my_paper.tex
    
    # Or use latexmk for automated compilation
    latexmk -pdf my_paper.tex
    

    Review checklist:

    • All sections present and properly formatted
    • Citations render correctly
    • Figures appear with proper captions
    • Page count within limits
    • Author guidelines followed
    • Supplementary materials prepared (if needed)

    Integration with Other Skills

    This skill works seamlessly with other scientific skills:

    Scientific Writing

    • Use scientific-writing skill for content guidance (IMRaD structure, clarity, precision)
    • Apply venue-specific templates from this skill for formatting
    • Combine for complete manuscript preparation

    Literature Review

    • Use literature-review skill for systematic literature search and synthesis
    • Apply appropriate citation style from venue requirements
    • Format references according to template specifications

    Peer Review

    • Use peer-review skill to evaluate manuscript quality
    • Use this skill to verify formatting compliance
    • Ensure adherence to reporting guidelines (CONSORT, STROBE, etc.)

    Research Grants

    • Cross-reference with research-grants skill for content strategy
    • Use this skill for agency-specific templates and formatting
    • Combine for comprehensive grant proposal preparation

    LaTeX Posters

    • This skill provides venue-agnostic poster templates
    • Use for conference-specific poster requirements
    • Integrate with visualization skills for figure creation

    Template Categories

    By Document Type

    Category Template Count Common Venues
    Journal Articles 30+ Nature, Science, PLOS, IEEE, ACM, Cell Press
    Conference Papers 20+ NeurIPS, ICML, CVPR, CHI, ISMB
    Research Posters 10+ A0, A1, 36×48, various packages
    Grant Proposals 15+ NSF, NIH, DOE, DARPA, foundations

    By Discipline

    Discipline Supported Venues
    Life Sciences Nature, Cell Press, PLOS, ISMB, RECOMB
    Physical Sciences Science, Physical Review, ACS, APS
    Engineering IEEE, ASME, AIAA, ACM
    Computer Science ACM, IEEE, NeurIPS, ICML, ICLR
    Medicine NEJM, Lancet, JAMA, BMJ
    Interdisciplinary PNAS, Nature Communications, Science Advances

    Helper Scripts

    query_template.py

    Search and retrieve templates by venue name, type, or keywords:

    # Find templates for a specific journal
    python scripts/query_template.py --venue "Nature" --type "article"
    
    # Search by keyword
    python scripts/query_template.py --keyword "machine learning"
    
    # List all available templates
    python scripts/query_template.py --list-all
    
    # Get requirements for a venue
    python scripts/query_template.py --venue "NeurIPS" --requirements
    

    customize_template.py

    Customize templates with author and project information:

    # Basic customization
    python scripts/customize_template.py \
      --template assets/journals/nature_article.tex \
      --output my_paper.tex
    
    # With author information
    python scripts/customize_template.py \
      --template assets/journals/nature_article.tex \
      --title "Novel Approach to Protein Folding" \
      --authors "Jane Doe, John Smith, Alice Johnson" \
      --affiliations "MIT, Stanford, Harvard" \
      --email "[email protected]" \
      --output my_paper.tex
    
    # Interactive mode
    python scripts/customize_template.py --interactive
    

    validate_format.py

    Check document compliance with venue requirements:

    # Validate a compiled PDF
    python scripts/validate_format.py \
      --file my_paper.pdf \
      --venue "Nature" \
      --check-all
    
    # Check specific aspects
    python scripts/validate_format.py \
      --file my_paper.pdf \
      --venue "NeurIPS" \
      --check page-count,margins,fonts
    
    # Generate validation report
    python scripts/validate_format.py \
      --file my_paper.pdf \
      --venue "Science" \
      --report validation_report.txt
    

    Best Practices

    Template Selection

    1. Verify currency: Check template date and compare with latest author guidelines
    2. Check official sources: Many journals provide official LaTeX classes
    3. Test compilation: Compile template before adding content
    4. Read comments: Templates include helpful inline comments

    Customization

    1. Preserve structure: Don't remove required sections or packages
    2. Follow placeholders: Replace marked placeholder text systematically
    3. Maintain formatting: Don't override venue-specific formatting
    4. Keep backups: Save original template before customization

    Compliance

    1. Check page limits: Verify before final submission
    2. Validate citations: Use correct citation style for venue
    3. Test figures: Ensure figures meet resolution requirements
    4. Review anonymization: Remove identifying information if required

    Submission

    1. Follow instructions: Read complete author guidelines
    2. Include all files: LaTeX source, figures, bibliography
    3. Generate properly: Use recommended compilation method
    4. Check output: Verify PDF matches expectations

    Common Formatting Requirements

    Page Limits (Typical)

    Venue Type Typical Limit Notes
    Nature Article 5 pages ~3000 words excluding refs
    Science Report 5 pages Figures count toward limit
    PLOS ONE No limit Unlimited length
    NeurIPS 8 pages + unlimited refs/appendix
    ICML 8 pages + unlimited refs/appendix
    NSF Proposal 15 pages Project description only
    NIH R01 12 pages Research strategy

    Citation Styles by Venue

    Venue Citation Style Format
    Nature Numbered (superscript) Nature style
    Science Numbered (superscript) Science style
    PLOS Numbered (brackets) Vancouver
    Cell Press Author-year Cell style
    ACM Numbered ACM style
    IEEE Numbered (brackets) IEEE style
    APA journals Author-year APA 7th

    Figure Requirements

    Venue Resolution Format Color
    Nature 300+ dpi TIFF, EPS, PDF RGB or CMYK
    Science 300+ dpi TIFF, PDF RGB
    PLOS 300-600 dpi TIFF, EPS RGB
    IEEE 300+ dpi EPS, PDF RGB or Grayscale

    Writing Style Guides

    Beyond formatting, this skill provides comprehensive writing style guides that capture how papers should read at different venues—not just how they should look.

    Why Style Matters

    The same research written for Nature will read very differently than when written for NeurIPS:

    • Nature/Science: Accessible to non-specialists, story-driven, broad significance
    • Cell Press: Mechanistic depth, comprehensive data, graphical abstract required
    • Medical journals: Patient-centered, evidence-graded, structured abstracts
    • ML conferences: Contribution bullets, ablation studies, reproducibility focus
    • CS conferences: Field-specific conventions, varying evaluation standards

    Available Style Guides

    Guide Covers Key Topics
    venue_writing_styles.md Master overview Style spectrum, quick reference
    nature_science_style.md Nature, Science, PNAS Accessibility, story-telling, broad impact
    cell_press_style.md Cell, Neuron, Immunity Graphical abstracts, eTOC, Highlights
    medical_journal_styles.md NEJM, Lancet, JAMA, BMJ Structured abstracts, evidence language
    ml_conference_style.md NeurIPS, ICML, ICLR, CVPR Contribution bullets, ablations
    cs_conference_style.md ACL, EMNLP, CHI, SIGKDD Field-specific conventions
    reviewer_expectations.md All venues What reviewers look for, rebuttal tips

    Writing Examples

    Concrete examples are available in assets/examples/:

    • nature_abstract_examples.md: Flowing paragraph abstracts for high-impact journals
    • neurips_introduction_example.md: ML conference intro with contribution bullets
    • cell_summary_example.md: Cell Press Summary, Highlights, eTOC format
    • medical_structured_abstract.md: NEJM, Lancet, JAMA structured format

    Workflow: Adapting to a Venue

    1. Identify target venue and load the appropriate style guide
    2. Review writing conventions: Tone, voice, abstract format, structure
    3. Check examples for section-specific guidance
    4. Review expectations: What do reviewers at this venue prioritize?
    5. Apply formatting: Use LaTeX template from assets/

    Resources

    Bundled Resources

    Writing Style Guides (in references/):

    • venue_writing_styles.md: Master style overview and comparison
    • nature_science_style.md: Nature/Science writing conventions
    • cell_press_style.md: Cell Press journal style
    • medical_journal_styles.md: Medical journal writing guide
    • ml_conference_style.md: ML conference writing conventions
    • cs_conference_style.md: CS conference writing guide
    • reviewer_expectations.md: What reviewers look for by venue

    Formatting Requirements (in references/):

    • journals_formatting.md: Comprehensive journal formatting requirements
    • conferences_formatting.md: Conference paper specifications
    • posters_guidelines.md: Research poster design and sizing
    • grants_requirements.md: Grant proposal requirements by agency

    Writing Examples (in assets/examples/):

    • nature_abstract_examples.md: High-impact journal abstract examples
    • neurips_introduction_example.md: ML conference introduction format
    • cell_summary_example.md: Cell Press Summary/Highlights/eTOC
    • medical_structured_abstract.md: NEJM/Lancet/JAMA abstract format

    Templates (in assets/):

    • journals/: Journal article LaTeX templates
    • posters/: Research poster templates
    • grants/: Grant proposal templates

    Scripts (in scripts/):

    • query_template.py: Search and retrieve templates
    • customize_template.py: Customize with author info
    • validate_format.py: Check compliance with requirements

    External Resources

    Journal Author Guidelines:

    • Nature: https://www.nature.com/nature/for-authors
    • Science: https://www.science.org/content/page/instructions-authors
    • PLOS: https://plos.org/resources/for-authors/
    • Cell Press: https://www.cell.com/author-guidelines

    Conference Formatting:

    • NeurIPS: https://neurips.cc/Conferences/2024/CallForPapers
    • ICML: https://icml.cc/Conferences/2024/StyleAuthorInstructions
    • CVPR: https://cvpr.thecvf.com/Conferences/2024/AuthorGuidelines

    Grant Resources:

    • NSF PAPPG: https://www.nsf.gov/publications/pub_summ.jsp?ods_key=pappg
    • NIH Forms: https://grants.nih.gov/grants/how-to-apply-application-guide.html
    • DOE Funding: https://science.osti.gov/grants

    Example Usage

    Example 1: Nature Article Submission

    User: "I need to prepare a manuscript for Nature"
    
    Response:
    1. Load Nature formatting requirements (references/journals_formatting.md)
    2. Retrieve Nature template (assets/journals/nature_article.tex)
    3. Key requirements:
       - Length: ~3000 words, ~5 pages
       - Format: Single column, 12pt font
       - Citations: Numbered superscript (Nature style)
       - Figures: 300+ dpi, RGB color
    4. Customize template with your title, authors, affiliations
    5. Compile and validate against requirements
    

    Example 2: NeurIPS Conference Paper

    User: "What are the formatting requirements for NeurIPS?"
    
    Response:
    From references/conferences_formatting.md:
    - Page limit: 8 pages main text + unlimited references/appendix
    - Format: Two-column, 10pt font
    - Template: neurips_2024.sty (official style file)
    - Anonymization: Required for initial submission
    - Citations: Numbered (brackets)
    - Figures: High resolution, colorblind-safe recommended
    

    Example 3: NSF Proposal

    User: "Help me format an NSF proposal"
    
    Response:
    NSF requirements (from references/grants_requirements.md):
    - Project Description: 15 pages maximum
    - Project Summary: 1 page (Overview, Intellectual Merit, Broader Impacts)
    - Budget Justification: 3-5 pages
    - Biographical Sketch: 3 pages per senior personnel
    - Font: Minimum 10pt, Times Roman or similar
    - Margins: 1 inch all sides
    Template: assets/grants/nsf_proposal_template.tex
    

    Example 4: Conference Poster

    User: "I need to create a poster for ISMB"
    
    Response:
    ISMB poster specifications:
    - Size: Typically A0 portrait (33.1 × 46.8 inches)
    - Recommended template: beamerposter or tikzposter
    - Font sizes: Title 60-85pt, Headers 36-48pt, Body 24-32pt
    - Include: QR code for paper/supplementary materials
    Available templates:
    - assets/posters/beamerposter_academic.tex
    

    Updates and Maintenance

    Template Currency:

    • Templates updated annually or when venues release new guidelines
    • Last updated: 2024
    • Check official venue sites for most current requirements

    Reporting Issues:

    • Template compilation errors
    • Outdated formatting requirements
    • Missing venue templates
    • Incorrect specifications

    Summary

    The venue-templates skill provides comprehensive access to:

    1. 50+ publication venue templates across disciplines
    2. Detailed formatting requirements for journals, conferences, posters, grants
    3. Helper scripts for template discovery, customization, and validation
    4. Integration with other scientific writing skills
    5. Best practices for successful academic submissions

    Use this skill whenever you need venue-specific formatting guidance or templates for academic publishing.

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